PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_9DB76B434.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Dof
Protein Properties Length: 365aa    MW: 38171.8 Da    PI: 10.9728
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_9DB76B434.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.71.3e-3871131262
                 zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                            +e alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt+GGalr vPvGgg+r+nk+ss
  Traes_4DL_9DB76B434.1  71 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRSS 131
                            67899*****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3455120IPR003851Zinc finger, Dof-type
PfamPF027018.4E-3374129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.55375129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MHSICQWVRR RVRRGGRPRA VGCRPTAGTA AGTPEVGGLP RSSAANEAAA GQQARPNSMT  60
ERARMARVPQ PEPALKCPRC DSTNTKFCYY NNYSLSQPRH FCKACRRYWT RGGALRSVPV  120
GGGCRRNKRS SKSSAGAASS SKPSSSSARQ LPGGASSMPS TTASTTLGAD GASIPPGLSS  180
MSHHLPFMGA MHPPGANLGL AFSAGLPQLA MQQQHHHMDG VDQFPLASGG GATFGASLEQ  240
WRVQQQQQFP FLELPPAPPM YQLGLQANRA AGSSAAAPAP SPAMFTLGQS SASTARRDEG  300
SMKQADSKGQ EMTLQRQFMM EALRQGDAVW GGNASDNNGN GSGSWTMNIP GFHSSSGGGD  360
GGGLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3758440.0AK375844.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107J22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629100.11e-111PREDICTED: dof zinc finger protein DOF3.6-like isoform X1
TrEMBLW5EK700.0W5EK70_WHEAT; Uncharacterized protein
STRINGMLOC_57297.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123012432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.12e-36Dof family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]